YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCMB1_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKLVMAQK RGETRALCLG VAMVVCAAIT YYILGTTVLP LYQKSVWTQE STCHLVETNI  60
   61 KDQEELEGRK VPQYPCLWVN VSAVGRWAML YHTEDTRDQN QQCSYIPRNL DNYQTALVDV 120
  121 KKVRANFYKH HNFYCFSAPQ VNETSVVYQR LYGPQILLFS FFWPTFLLTG GLLIIAMVKL 180
  181 NRSLSVLAAQ K

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	35	0.91
Non-Cytoplasmic	36	155	0.97
Transmembrane Helix	156	178	0.87
Cytoplasmic	179	191	0.88