YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX42_RAT
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRATRSLV MKTGGLRTQG THSPGSAASS SQRRMTPYVD CYAQRSYPMP DEPYCTELSE  60
   61 EQRALKEKEK GSWAQLSQAE KVALYRLQFH ETFAEMNHRS NEWKTVMGCV FFFIGFTALV 120
  121 IWWQRVYVFP KKVVTLTEER KAQQLQRLLD MKSNPIQGLS AHWDYEKKEW KK

Type	Start	End	Confidence
Cytoplasmic	1	102	0.87
Transmembrane Helix	103	123	0.89
Non-Cytoplasmic	124	172	0.87