YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S13A3_RAT
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.45
Transmembrane Helix	14	34	0.61
Non-Cytoplasmic	35	51	0.64
Transmembrane Helix	52	76	0.73
Cytoplasmic	77	111	0.63
Transmembrane Helix	112	134	0.75
Non-Cytoplasmic	135	141	0.57
Transmembrane Helix	142	164	0.80
Cytoplasmic	165	233	0.97
Transmembrane Helix	234	256	0.87
Non-Cytoplasmic	257	277	0.89
Transmembrane Helix	278	300	0.91
Cytoplasmic	301	337	0.93
Transmembrane Helix	338	356	0.90
Non-Cytoplasmic	357	367	0.79
Transmembrane Helix	368	390	0.92
Cytoplasmic	391	421	0.96
Transmembrane Helix	422	441	0.82
Non-Cytoplasmic	442	458	0.79
Transmembrane Helix	459	480	0.81
Cytoplasmic	481	482	0.44
Transmembrane Helix	483	503	0.59
Non-Cytoplasmic	504	504	0.31
Transmembrane Helix	505	538	0.57
Cytoplasmic	539	545	0.48
Transmembrane Helix	546	568	0.85
Non-Cytoplasmic	569	600	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALAALAKK VWSARRLLVL LLVPLALLPI LFALPPKEGR CLYVILLMAV YWCTEALPLS  60
   61 VTALLPIILF PFMGILPSSK VCPQYFLDTN FLFLSGLIMA SAIEERNLHR RIALKVLMLV 120
  121 GVQPARLILG MMVTTSFLSM WLSNTASTAM MLPIASAILK SLFGQRDTRK DLPREGEDST 180
  181 AAVRGNGLRT VPTEMQFLAS SEGGHAEDVE APLELPDDSK EEEHRRNIWK GFLISIPYSA 240
  241 SIGGTATLTG TAPNLILLGQ LKSFFPQCDV VNFGSWFIFA FPLMLLFLLV GWLWISFLYG 300
  301 GMSWRGWRKK NSKLQDVAED KAKAVIQEEF QNLGPIKFAE QAVFILFCLF AILLFSRDPK 360
  361 FIPGWASLFA PGFVSDAVTG VAIVTILFFF PSQKPSLKWW FDFKAPNSET EPLLSWKKAQ 420
  421 ETVPWNIILL LGGGFAMAKG CEESGLSAWI GGQLHPLEHV PPLLAVLLIT VVIAFFTEFA 480
  481 SNTATIIIFL PVLAELAIRL HVHPLYLMIP GTVSCSYAFM LPVSTPPNSI AFSTGHLLVK 540
  541 DMVRTGLLMN LMGVLLLSLA MNTWAQAIFQ LGTFPDWANT HAANVTALPP ALTNNTVQTL 600
  601