YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.93
Transmembrane Helix	14	36	0.82
Non-Cytoplasmic	37	78	0.86
Transmembrane Helix	79	99	0.92
Cytoplasmic	100	107	0.74
Transmembrane Helix	108	132	0.78
Non-Cytoplasmic	133	133	0.50
Transmembrane Helix	134	157	0.73
Cytoplasmic	158	167	0.86
Transmembrane Helix	168	191	0.88
Non-Cytoplasmic	192	197	0.82
Transmembrane Helix	198	218	0.95
Cytoplasmic	219	259	0.94
Transmembrane Helix	260	280	0.86
Non-Cytoplasmic	281	303	0.84
Transmembrane Helix	304	324	0.89
Cytoplasmic	325	336	0.85
Transmembrane Helix	337	357	0.95
Non-Cytoplasmic	358	363	0.80
Transmembrane Helix	364	385	0.92
Cytoplasmic	386	394	0.83
Transmembrane Helix	395	419	0.88
Non-Cytoplasmic	420	429	0.80
Transmembrane Helix	430	449	0.94
Cytoplasmic	450	465	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENRCLPKKV PGFCSFRYGL AILLHFCNIV IMAQRVCLNL TMVAMVNKTE PPHLSNKSVA  60
   61 EMLDNVKNPV HSWSLDIQGL VLSSVFLGMV VIQVPVGYLS GAYPMEKIIG SSLFLSSVLS 120
  121 LLIPPAAQVG AALVIVCRVL QGIAQGAVST GQHGIWVKWA PPLERGRLTS MTLSGFVMGP 180
  181 FIALLVSGFI CDLLGWPMVF YIFGIVGCVL SLFWFILLFD DPNNHPYMSS SEKDYITSSL 240
  241 MQQVHSGRQS LPIKAMLKSL PLWAIILNSF AFIWSNNLLV TYTPTFISTT LHVNVRENGL 300
  301 LSSLPYLLAY ICGIVAGQMS DFLLSRKIFS VVAVRKLFTT LGIFCPVIFV VCLLYLSYNF 360
  361 YSTVIFLTLA NSTLSFSFCG QLINALDIAP RYYGFLKAVT ALIGIFGGLI SSTLAGLILN 420
  421 QDPEYAWHKN FFLMAGINVT CLAFYLLFAK GDIQDWAKET KTTRL