YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD53_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMSSLKLLK YVLFFFNFLF WVCGCCILGF GIHLLVQNTY GILFRNLPFL TLGNVLVIVG  60
   61 SIIMVVAFLG CMGSIKENKC LLMSFFVLLL LILLAEVTLA ILLFVYEKKI NTLVAEGLND 120
  121 SIQHYHSDNS TRMAWDFIQS QLQCCGVNGS SDWISGPPSS CPSGADVQGC YKKGQAWFHS 180
  181 NFLYIGIVTI CVCVIQVLGM SFALTLNCQI DKTSQALGL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	35	0.92
Non-Cytoplasmic	36	49	0.88
Transmembrane Helix	50	72	0.91
Cytoplasmic	73	80	0.85
Transmembrane Helix	81	104	0.91
Non-Cytoplasmic	105	182	0.97
Transmembrane Helix	183	206	0.90
Cytoplasmic	207	219	0.92