YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S28A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.99
Transmembrane Helix	76	97	0.91
Non-Cytoplasmic	98	104	0.76
Transmembrane Helix	105	125	0.96
Cytoplasmic	126	145	0.94
Transmembrane Helix	146	166	0.96
Non-Cytoplasmic	167	173	0.88
Transmembrane Helix	174	192	0.94
Cytoplasmic	193	201	0.76
Transmembrane Helix	202	220	0.94
Non-Cytoplasmic	221	235	0.85
Transmembrane Helix	236	254	0.45
Cytoplasmic	255	256	0.33
Transmembrane Helix	257	282	0.82
Non-Cytoplasmic	283	290	0.36
Transmembrane Helix	291	314	0.80
Cytoplasmic	315	333	0.41
Transmembrane Helix	334	356	0.89
Non-Cytoplasmic	357	362	0.39
Transmembrane Helix	363	382	0.60
Cytoplasmic	383	416	0.62
Transmembrane Helix	417	438	0.86
Non-Cytoplasmic	439	527	0.48
Transmembrane Helix	528	551	0.86
Cytoplasmic	552	563	0.57
Transmembrane Helix	564	588	0.84
Non-Cytoplasmic	589	659	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSEGRKSA SQDTSENGME NPGLELMEVG NLEQGKTLEE VTQGHSLKDG LGHSSLWRRI  60
   61 LQPFTKARSF YQRHAGLFKK ILLGLLCLAY AAYLLAACIL NFRRALALFV ITCLVIFILA 120
  121 CHFLKKFFAK KSIRCLKPLK NTRLRLWLKR VFMGAAVVGL ILWLALDTAQ RPEQLISFAG 180
  181 ICMFILILFA CSKHHSAVSW RTVFWGLGLQ FVFGILVIRT EPGFNAFQWL GDQIQIFLAY 240
  241 TVEGSSFVFG DTLVQSVFAF QSLPIIIFFG CVMSILYYLG LVQWVIQKIA WFLQITMGTT 300
  301 AAETLAVAGN IFVGMTEAPL LIRPYLADMT LSEIHAVMTG GFATIAGTVL GAFISFGIDA 360
  361 SSLISASVMA APCALALSKL VYPEVEESKF KSKEGVKLPR GEERNILEAA SNGATDAIAL 420
  421 VANVAANLIA FLAVLAFINS TLSWLGEMVD IHGLTFQVIC SYVLRPMVFM MGVQWADCPL 480
  481 VAEIVGVKFF INEFVAYQQL SQYKNKRLSG VEEWINGEKQ WISVKAEIIA TFSLCGFANL 540
  541 TSIGITLGGL TSMVPQRKSD LCKLVVRALF TGACVSFISA CMAGILYVPR GAETDCVSFL 600
  601 NTNFTNRTYE TYVCCRELFQ STLLNGTNMP SFSGPWQDKE SSLRNLAKCC DLYTSTVCA