YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLP2R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPQPSPAVP SRCREAPVPR VRAQPVGIPE AQGPVPLHSQ QMRLLWGPGR PFLALLLLVS  60
   61 IKQVTGSLLK ETTQKWANYK EKCLEDLHNR LSGIFCNGTF DRYVCWPHSY PGNVSVPCPS 120
  121 YLPWWNAESP GRAYRHCLAQ GTWQTRENTT DIWQDESECS ENHSFRQNVD HYALLYTLQL 180
  181 MYTVGYSVSL ISLFLALTLF LFLRKLHCTR NYIHMNLFAS FILKVLAVLV KDMVSHNSYS 240
  241 KRPDDESGWM SYLSETSVSC RSVQVLLHYF VGTNHLWLLV EGLYLHTLLE PTVFPERRLW 300
  301 PKYLVVGWAF PMLFVIPWGF ARAHLENTRC WATNGNLKIW WIIRGPMLLC VTVNFFIFLK 360
  361 ILKLLISKLK AHQMCFRDYK YRLAKSTLLL IPLLGVHEVL FTFFPDDQVQ GFSKRIRLFI 420
  421 QLTLSSVHGF LVALQYGFAN GEVKAELRKS WGRFLLARHW GCRTCVLGKN FRFLGKCSKK 480
  481 LSEGDGSETL QKLRFSTCSS HLASETLGDV GVQPHRGRGA WPRGSSLSES SEGDFTLANT 540
  541 MEEILEESEI

Type	Start	End	Confidence
Non-Cytoplasmic	1	181	0.73
Transmembrane Helix	182	203	0.93
Cytoplasmic	204	211	0.80
Transmembrane Helix	212	230	0.82
Non-Cytoplasmic	231	265	0.74
Transmembrane Helix	266	288	0.63
Cytoplasmic	289	302	0.77
Transmembrane Helix	303	321	0.95
Non-Cytoplasmic	322	339	0.92
Transmembrane Helix	340	362	0.92
Cytoplasmic	363	382	0.92
Transmembrane Helix	383	401	0.90
Non-Cytoplasmic	402	417	0.82
Transmembrane Helix	418	439	0.77
Cytoplasmic	440	550	0.81