YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLD16_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLLQYAAC FLAIFSTGFL IVATRTDCWM VNADDSLEVS TKCRGLWWEC VTNAFDGIRT  60
   61 CDEYDSIYAE HPLKLVVTRA LMITADILAG FGFITLLLGL DCVKFLPDEP HIKVRLCFVA 120
  121 GTVLLIAGTP GIIGSVWYAV DVYVERSSLV LHNIFLGIQY KFGWSCWLGM AGSLGCFLAG 180
  181 ALLTCCLYLF KDVGPERNYP YAMRKPYSTA GVSMAKSYKA PRTETAKMYA VDTRV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.82
Transmembrane Helix	7	26	0.86
Non-Cytoplasmic	27	80	0.94
Transmembrane Helix	81	103	0.85
Cytoplasmic	104	115	0.82
Transmembrane Helix	116	139	0.88
Non-Cytoplasmic	140	166	0.91
Transmembrane Helix	167	190	0.90
Cytoplasmic	191	235	0.98