YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCN3A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	123	0.95
Transmembrane Helix	124	147	0.88
Non-Cytoplasmic	148	191	0.88
Transmembrane Helix	192	212	0.78
Cytoplasmic	213	222	0.72
Transmembrane Helix	223	242	0.81
Non-Cytoplasmic	243	249	0.75
Transmembrane Helix	250	271	0.93
Cytoplasmic	272	401	0.87
Transmembrane Helix	402	426	0.91
Non-Cytoplasmic	427	710	0.81
Transmembrane Helix	711	730	0.87
Cytoplasmic	731	741	0.72
Transmembrane Helix	742	764	0.85
Non-Cytoplasmic	765	780	0.82
Transmembrane Helix	781	801	0.88
Cytoplasmic	802	824	0.81
Transmembrane Helix	825	849	0.89
Non-Cytoplasmic	850	879	0.88
Transmembrane Helix	880	900	0.77
Cytoplasmic	901	910	0.77
Transmembrane Helix	911	933	0.93
Non-Cytoplasmic	934	1160	0.92
Transmembrane Helix	1161	1181	0.85
Cytoplasmic	1182	1196	0.89
Transmembrane Helix	1197	1215	0.89
Non-Cytoplasmic	1216	1227	0.74
Transmembrane Helix	1228	1251	0.81
Cytoplasmic	1252	1273	0.86
Transmembrane Helix	1274	1300	0.88
Non-Cytoplasmic	1301	1353	0.77
Transmembrane Helix	1354	1374	0.49
Cytoplasmic	1375	1393	0.49
Transmembrane Helix	1394	1419	0.85
Non-Cytoplasmic	1420	1475	0.54
Transmembrane Helix	1476	1496	0.80
Cytoplasmic	1497	1506	0.59
Transmembrane Helix	1507	1531	0.80
Non-Cytoplasmic	1532	1537	0.52
Transmembrane Helix	1538	1561	0.83
Cytoplasmic	1562	1590	0.53
Transmembrane Helix	1591	1607	0.62
Non-Cytoplasmic	1608	1608	0.31
Transmembrane Helix	1609	1631	0.74
Cytoplasmic	1632	1644	0.57
Transmembrane Helix	1645	1662	0.57
Non-Cytoplasmic	1663	1696	0.59
Transmembrane Helix	1697	1721	0.85
Cytoplasmic	1722	1951	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQALLVPPG PESFRLFTRE SLAAIEKRAA EEKAKKPKKE QDIDDENKPK PNSDLEAGKN  60
   61 LPFIYGDIPP EMVSEPLEDL DPYYVSKKTF VVLNKGKAIF RFSATSALYI LTPLNPVRKI 120
  121 AIKILVHSLF SMLIMCTILT NCVFMTLSNP PDWTKNVEYT FTGIYTFESL IKILARGFCL 180
  181 EDFTFLRDPW NWLDFSVIVM AYVTEFVDLG NVSALRTFRV LRALKTISVI PGLKTIVGAL 240
  241 IQSVKKLSDV MILTVFCLSV FALIGLQLFM GNLRNKCSQW PPSDSAFETN TTSYFNGTMD 300
  301 SNGTFVNVTM STFNWKDYIA DDSHFYVLDG QKDPLLCGNG SDAGQCPEGY ICVKAGRNPN 360
  361 YGYTSFDTFS WAFLSLFRLM TQDYWENLYQ LTLRAAGKTY MIFFVLVIFL GSFYLVNLIL 420
  421 AVVAMAYEEQ NQATLEEAEQ KEAEFQQMLE QLKKQQEEAQ AVAAASAASR DFSGIGGLGE 480
  481 LLESSSEASK LSSKSAKEWR NRRKKRRQRE HLEGNHRADG DRFPKSESED SVKRRSFLLS 540
  541 LDGNPLTGDK KLCSPHQSLL SIRGSLFSPR RNSKTSIFSF RGRAKDVGSE NDFADDEHST 600
  601 FEDSESRRDS LFVPHRPGER RNSNGTTTET EVRKRRLSSY QISMEMLEDS SGRQRSMSIA 660
  661 SILTNTMEEL EESRQKCPPC WYRFANVFLI WDCCDAWLKV KHLVNLIVMD PFVDLAITIC 720
  721 IVLNTLFMAM EHYPMTQQFS SVLTVGNLVF TGIFTAEMVL KIIAMDPYYY FQEGWNIFDG 780
  781 IIVSLSLMEL GLANVEGLSV LRSFRLLRVF KLAKSWPTLN MLIKIIGNSV GALGNLTLVL 840
  841 AIIVFIFAVV GMQLFGKSYK ECVCKINVDC KLPRWHMNDF FHSFLIVFRV LCGEWIETMW 900
  901 DCMEVAGQTM CLIVFMLVMV IGNLVVLNLF LALLLSSFSS DNLAATDDDN EMNNLQIAVG 960
  961 RMQKGIDFVK NKIRECFRKA FFRKPKVIEI QEGNKIDSCM SNNTGIEISK ELNYLKDGNG1020
 1021 TTSGVGTGSS VEKYVIDEND YMSFINNPSL TVTVPIAVGE SDFENLNTEE FSSESELEES1080
 1081 KEKLNATSSS EGSTVDVAPP REGEQAEIEP EEDLKPEACF TEGCIKKFPF CQVSTEEGKG1140
 1141 KIWWNLRKTC YSIVEHNWFE TFIVFMILLS SGALAFEDIY IEQRKTIKTM LEYADKVFTY1200
 1201 IFILEMLLKW VAYGFQTYFT NAWCWLDFLI VDVSLVSLVA NALGYSELGA IKSLRTLRAL1260
 1261 RPLRALSRFE GMRVVVNALV GAIPSIMNVL LVCLIFWLIF SIMGVNLFAG KFYHCVNTTT1320
 1321 GNMFEIKEVN NFSDCQALGK QARWKNVKVN FDNVGAGYLA LLQVATFKGW MDIMYAAVDS1380
 1381 RDVKLQPIYE ENLYMYLYFV IFIIFGSFFT LNLFIGVIID NFNQQKKKFG GQDIFMTEEQ1440
 1441 KKYYNAMKKL GSKKPQKPIP RPANKFQGMV FDFVTRQVFD ISIMILICLN MVTMMVETDD1500
 1501 QSKYMTLVLS RINLVFIVLF TGEFLLKLIS LRYYYFTIGW NIFDFVVVIL SIVGMFLAEL1560
 1561 IEKYFVSPTL FRVIRLARIG RILRLIKGAK GIRTLLFALM MSLPALFNIG LLLFLVMFIY1620
 1621 AIFGMSNFAY VKKEAGIDDM FNFETFGNSM ICLFQITTSA GWDGLLAPIL NSAPPDCDPD1680
 1681 AIHPGSSVKG DCGNPSVGIF FFVSYIIISF LVVVNMYIAV ILENFSVATE ESAEPLSEDD1740
 1741 FEMFYEVWEK FDPDATQFIE FCKLSDFAAA LDPPLLIAKP NKVQLIAMDL PMVSGDRIHC1800
 1801 LDILFAFTKR VLGESGEMDA LRIQMEDRFM ASNPSKVSYE PITTTLKRKQ EEVSAAIIQR1860
 1861 NYRCYLLKQR LKNISSKYDK ETIKGRIDLP IKGDMVIDKL NGNSTPEKTD GSSSTTSPPS1920
 1921 YDSVTKPDKE KFEKDKPEKE IKGKEVRENQ K