YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDS2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELRQRAVR EDAPPEDKES ESEAKLDGET ASDSESRAET APPPTSIDDT PEVLNRALSN  60
   61 LSSRWKNWWV RGILTMAMIA FFFIIIYLGP MVLMMIVMCV QIKCFHEIIT IGYNVYHSYD 120
  121 LPWFRTLSWY FLLCVNYFFY GETVTDYFFT LVQREEPLRI LSKYHRFISF TLYLTGFCMF 180
  181 VLSLVKKHYR LQFYMFGWTH VTLLIVVTQS HLVIHNLFEG MIWFIVPISC VICNDIMAYM 240
  241 FGFFFGRTPL IKLSPKKTWE GFIGGFFATV VFGLLLSYVM SGYRCFVCPV EYNNDTNSFT 300
  301 VDCEPSDLFR LQEYNIPGVI QSLVGWKTMR MYPFQIHSAL STFASLIGPF GGFFASGFKR 360
  361 AFKIKDFANT IPGHGGIMDR FDCQYLMATF VNVYIASFIR GPNPSKLIQQ FLTLRPDQQL 420
  421 HIFNTLKSHL TDKGILMSAL EEE

Type	Start	End	Confidence
Cytoplasmic	1	67	0.92
Transmembrane Helix	68	88	0.91
Non-Cytoplasmic	89	93	0.62
Transmembrane Helix	94	116	0.53
Cytoplasmic	117	122	0.54
Transmembrane Helix	123	141	0.72
Non-Cytoplasmic	142	166	0.69
Transmembrane Helix	167	185	0.93
Cytoplasmic	186	193	0.71
Transmembrane Helix	194	214	0.81
Non-Cytoplasmic	215	221	0.80
Transmembrane Helix	222	245	0.91
Cytoplasmic	246	260	0.84
Transmembrane Helix	261	280	0.93
Non-Cytoplasmic	281	335	0.92
Transmembrane Helix	336	358	0.89
Cytoplasmic	359	443	0.82