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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CDHR1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRGPQVALV LGLLCIYLAQ ANFAPHFFDN GVGSTNGNMA LFSLPEDTPV GSHVYTLNGT  60
   61 DPEGDPISYH ISFDPSTRSV FSVDPNFGNI TLVEELDRER EDEIEAIISI SDGLNLVAEK 120
  121 VVIVVTDAND EAPRFLQEPY NILVPENTPA GSSIFKVQAE DKDTGSGGSV TYFLQSLHSS 180
  181 KFTVDRHSGV LRLQAGATLD YEKSRAHFIT VVAKDGGGRL RGADVVFSAT TTVTINVEDV 240
  241 QDTAPIFVGT PYYGYVYEDT LPGSEVLTVV AIDGDRGKPN HILYRLLNES DGLFEINETS 300
  301 GAISVLQSPA QLRREVYELH VQVTEVNSSG SPAAQSTVPV IIRIVDLNNH PPTFYGESGP 360
  361 QNKFELSMFE HPPQGEILRG LKITVNDSDQ GANAKFNLRL VGPGGIFRVV PQTVLNEAQV 420
  421 TIIVENSAAI DFEKSKSLTF KLLAIEVNTP EKFSSTADIV IQLLDTNDNV PKFTSHYYIA 480
  481 RIPENVPGGS NVVAVTAVDP DTGPWGKVQY SIYGTGSDLF LIHPSTGLIY TQPWASLDAE 540
  541 GTSRYNFYVK AEDMDGRYSL AEVFVTLLDV NDHYPQFVQS VQEKTMVLGT PLKIEATDQD 600
  601 AEEPNNLVDY SITRAEPVNV FDIDAHTGEI RLKNSIRSLE ALHNITPSGE YSWSLQVQAK 660
  661 DRGSPSFSTT ALLKIDITDT ERLSRSSMAA FLIQTKDNPM KAVGVLAGVM AIVVAITVLI 720
  721 STATFWRNKK SNKVLPVRRV LRRRPSPAPH TVRIEWLKFR RAKAASKFIL KEDPPNENCN 780
  781 NSRVGVTVPP RAPALPPPPK MASSTVAQQT VPTVSGSLTP QPSQQLPTPK PLGGPAQSSL 840
  841 VSELKQKFEK KSLGNKAYV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle