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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SEM4F_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLARAERPRP GPRPPPVFPF PPPLSLLLLL AILSAPVCGR VPRSVPRTSL PISEADSYLT  60
   61 RFAASHTYNY SALLVDPASH TLYVGARDSI FALTLPFSGE RPRRIDWMVP ETHRQNCRKK 120
  121 GKKEDECHNF IQILAIVNAS HLLTCGTFAF DPKCGVIDVS SFQQVERLES GRGKCPFEPA 180
  181 QRSAAVMAGG VLYTATVKNF LGTEPIISRA VGRAEDWIRT ETLSSWLNAP AFVAAMVLSP 240
  241 AEWGDEDGDD EIFFFFTETS RVLDSYERIK VPRVARVCAG DLGGRKTLQQ RWTTFLKADL 300
  301 LCPGPEHGRA SGVLQAMAEL RPQPGAGTPI FYGIFSSQWE GAAISAVCAF RPQDIRAVLN 360
  361 GPFRELKHDC NRGLPVMDNE VPQPRPGECI ANNMKLQQFG SSLSLPDRVL TFIRDHPLMD 420
  421 RPVFPADGRP LLVTTDTAYL RVVAHRVTSL SGKEYDVLYL GTEDGHLHRA VRIGAQLSVL 480
  481 EDLALFPEPQ PVESMKLYHD WLLVGSHTEV TQVNTSNCGR LQSCSECILA QDPVCAWSFR 540
  541 LDACVAHAGE HRGMVQDIES ADVSSLCPKE PGEHPVVFEV PVATVGHVVL PCSPSSAWAS 600
  601 CVWHQPSGVT ALTPRRDGLE VVVTPGAMGA YACECQEGGA ARVVAAYSLV WGSQRGPSNR 660
  661 AHTVVGAGLV GFLLGVLAAS LTLLLIGRRQ QRRRQRELLA RDKVGLDLGA PPSGTTSYSQ 720
  721 DPPSPSPEDE RLPLALGKRG SGFGGFPPPF LLDSCPSPAH IRLTGAPLAT CDETSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle