YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD81_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVEGCTKCI KYLLFVFNFV FWLAGGVILG VALWLRHDPQ TTTLLYLELG DKPAPSTFYV  60
   61 GIYILIAVGA VMMFVGFLGC YGAIQESQCL LGTFFTCLVI LFACEVAAGI WGFVNKDQIA 120
  121 KDVKQFYDQA LQQAVMDDDA NNAKAVVKTF HETLNCCGSN TLTTLTTAVL RNSLCPSSSN 180
  181 SFTQLLKEDC HQKIDELFSG KLYLIGIAAI VVAVIMIFEM ILSMVLCCGI RNSSVY

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	35	0.91
Non-Cytoplasmic	36	58	0.92
Transmembrane Helix	59	81	0.92
Cytoplasmic	82	89	0.80
Transmembrane Helix	90	111	0.93
Non-Cytoplasmic	112	204	0.95
Transmembrane Helix	205	228	0.90
Cytoplasmic	229	236	0.85