YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAP2_RAT
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEFLEDPSV LTKDKLKSEL VANNVTLPAG EQRKDVYVQL YLQHLTARNR PPLAAGANSK  60
   61 GPPDFSSDEE REPTPVLGSG ASVGRGRGAV GRKATKKTDK PRPEDKDDLD VTELSNEELL 120
  121 EQLVRYGVNP GPIVGTTRKL YEKKLLKLRE QGAESRSSTP LPTVSSSAEN TRQNGSNDSD 180
  181 RYSDNDEDSK IELKLEKREP LKGRAKTPVT LKQRRIEHNQ SYSEAGVTET EWTSGSSKGG 240
  241 PLQALTREST RGSRRTPRRR VEPSQHFRVD GAVISESTPI AETIKASSND SLVANRLTGN 300
  301 FKHASSILPI TEFSDITRRT PKKPLTRAEV GEKTEERRVE RDILKEMFPY EASTPTGISA 360
  361 SCRRPIKGAA GRPLELSDFR MEESFSSKYV PKYVPLADVK SEKTKKGRSV PMWIKMLLFA 420
  421 LVAGFLFLVY QAMETNQGNP FTNFLQDTKI SN

Type	Start	End	Confidence
Cytoplasmic	1	411	0.91
Transmembrane Helix	412	433	0.90
Non-Cytoplasmic	434	452	0.92