YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DHB2_RAT
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPFSSESAW LCLTATAVLG GMLLCKAWSS GQLRSQVVCL AGLWGGACLL SLSLLCSLFL  60
   61 LSVSCFFLLY VSSSDQDLLP VDQKAVLVTG ADSGFGHALA KHLDKLGFTV FAGVLDKEGP 120
  121 GAEELRKNCS ERLSVLQMDV TKPEQIKDVH SEVAEKIQDK GLWAVVNNAG VLHFPIDGEL 180
  181 IPMTVYRKCM AVNFFGAVEV TKVFLPLLRK SKGRLVNVSS MGAMIPFQMV AAYASTKAAI 240
  241 SMFSAVIRQE LAKWGVKVVT IHPGGFQTNI VGSQDSWDKM EKEILDHFSK EIQENYGQEY 300
  301 VHTQKLALPV MREMSNPDIT PVLRDIQHAI CAKNPSSFYC SGRMTYLWIC FAAYSPISLL 360
  361 DYILKNYFTP KLMPRALRTA S

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.59
Transmembrane Helix	8	28	0.90
Cytoplasmic	29	39	0.53
Transmembrane Helix	40	70	0.80
Non-Cytoplasmic	71	343	0.73
Transmembrane Helix	344	364	0.58
Cytoplasmic	365	381	0.53