YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FADS2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGGNQGEG STELQAPMPT FRWEEIQKHN LRTDRWLVID RKVYNVTKWS QRHPGGHRVI  60
   61 GHYSGEDATD AFRAFHLDLD FVGKFLKPLL IGELAPEEPS LDRGKSSQIT EDFRALKKTA 120
  121 EDMNLFKTNH LFFFLLLSHI IVMESIAWFI LSYFGNGWIP TVITAFVLAT SQAQAGWLQH 180
  181 DYGHLSVYKK SIWNHIVHKF VIGHLKGASA NWWNHRHFQH HAKPNIFHKD PDIKSLHVFV 240
  241 LGEWQPLEYG KKKLKYLPYN HQHEYFFLIG PPLLIPMYFQ YQIIMTMIRR RDWVDLAWAI 300
  301 SYYARFFYTY IPFYGILGAL VFLNFIRFLE SHWFVWVTQM NHIVMEIDLD HYRDWFSSQL 360
  361 AATCNVEQSF FNDWFSGHLN FQIEHHLFPT MPRHNLHKIA PLVKSLCAKH GIEYQEKPLL 420
  421 RALLDIVSSL KKSGELWLDA YLHK

Type	Start	End	Confidence
Cytoplasmic	1	130	0.95
Transmembrane Helix	131	151	0.89
Non-Cytoplasmic	152	157	0.68
Transmembrane Helix	158	178	0.66
Cytoplasmic	179	195	0.62
Transmembrane Helix	196	210	0.26
Non-Cytoplasmic	211	264	0.53
Transmembrane Helix	265	285	0.85
Cytoplasmic	286	305	0.51
Transmembrane Helix	306	326	0.93
Non-Cytoplasmic	327	444	0.54