YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METSSPWPPR PSPSAGLSLE ARLGVDTRLW AKVLFTALYS LIFAFGTAGN ALSVHVVLKA  60
   61 RAGRPGRLRY HVLSLALSAL LLLLVSMPME LYNFVWSHYP WVFGDLGCRG YYFVRELCAY 120
  121 ATVLSVASLS AERCLAVCQP LRARRLLTPR RTRRLLSLVW VASLGLALPM AVIMGQKHEV 180
  181 ESADGEPEPA SRVCTVLVSR ATLQVFIQVN VLVSFALPLA LTAFLNGITV NHLMALYSQV 240
  241 PSASAQVSSI PSRLELLSEE GLLGFITWRK TLSLGVQASL VRHKDASQIR SLQHSAQVLR 300
  301 AIVAVYVICW LPYHARRLMY CYIPDDGWTN ELYDFYHYFY MVTNTLFYVS SAVTPILYNA 360
  361 VSSSFRKLFL ESLGSLCGEQ HSLVPLPQEA PESTTSTYSF RLWGSPRNPS LGEIQV

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.92
Transmembrane Helix	35	58	0.86
Cytoplasmic	59	69	0.90
Transmembrane Helix	70	92	0.89
Non-Cytoplasmic	93	116	0.84
Transmembrane Helix	117	136	0.90
Cytoplasmic	137	154	0.91
Transmembrane Helix	155	175	0.92
Non-Cytoplasmic	176	210	0.90
Transmembrane Helix	211	230	0.87
Cytoplasmic	231	295	0.95
Transmembrane Helix	296	315	0.89
Non-Cytoplasmic	316	336	0.90
Transmembrane Helix	337	358	0.90
Cytoplasmic	359	416	0.94