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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PTBP3_RAT
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSTSAGVY ANGNDNKKFK GDRPPCSPSR VLHLRKIPCD VTEAEVISLG LPFGKVTNLL  60
   61 MLKGKSQAFL EMASEEAAVT MINYYTPVTP HLRSQPVYIQ YSNHRELKTD NLPNQARAQA 120
  121 ALQAVSAVQS GNLSLPGATS NEGTLLPGQS PVLRIIIENL FYPVTLEVLH QIFSKFGTVL 180
  181 KIITFTKNNQ FQALLQYADP VNAQYAKMAL DGQNIYNACC TLRIDFSKLT SLNVKYNNDK 240
  241 SRDFTRLDLP TGDGQPSLEP PMAAAFGAPG IMSSPYAGAA GFAPAIAFPQ AAGLSVSAVP 300
  301 GALGPLTLTS SAVSGRMAIP GASGIPGNSV LLVTNLNPDF ITPHGLFILF GVYGDVHRVK 360
  361 IMFNKKENAL VQMADASQAQ IAMNHLSGQR LYGKVLRATL SKHQAVQLPR EGQEDQGLTK 420
  421 DFSNSPLHRF KKPGSKNFQN IFPPSATLHL SNIPPSVTMD DLKNLFTEAG CSVKAFKFFQ 480
  481 KDRKMALIQL GSVEEAIQAL IELHNHDLGE NHHLRVSFSK STI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle