YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S28A3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	119	0.99
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	144	0.81
Transmembrane Helix	145	166	0.88
Cytoplasmic	167	186	0.98
Transmembrane Helix	187	208	0.95
Non-Cytoplasmic	209	215	0.82
Transmembrane Helix	216	234	0.96
Cytoplasmic	235	244	0.76
Transmembrane Helix	245	263	0.95
Non-Cytoplasmic	264	299	0.94
Transmembrane Helix	300	324	0.88
Cytoplasmic	325	332	0.86
Transmembrane Helix	333	356	0.74
Non-Cytoplasmic	357	376	0.74
Transmembrane Helix	377	399	0.83
Cytoplasmic	400	405	0.50
Transmembrane Helix	406	425	0.70
Non-Cytoplasmic	426	462	0.47
Transmembrane Helix	463	489	0.78
Cytoplasmic	490	496	0.39
Transmembrane Helix	497	516	0.85
Non-Cytoplasmic	517	571	0.56
Transmembrane Helix	572	596	0.87
Cytoplasmic	597	607	0.56
Transmembrane Helix	608	629	0.88
Non-Cytoplasmic	630	705	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSDPDPGK NSEPSKSKMS LELRPTAPSD QGRLNEAFQD EDLEEQNAPG NSTVRSRVVQ  60
   61 SGEQGRAKQD DRQITIEQEP LGPKEGTEEE SEDERQKGFL ERKYDTVCEF CRKHRVILQH 120
  121 TIWAVLLTGF LALVIAACAL NFHRALPLFV ITLVTIFFVV WDRLMAKYEQ RIDDVLSPGK 180
  181 RLLERHWFWL KWVVWCSLIL AVILWLALDT ARLGQQQLIS FGGLVMYIVL LFLFSKHPTR 240
  241 VYWRPVFWGI GLQFLLGLLI LRTRPGFVAF DWMGKQVQTF LGYTDAGAQF VFGEKYTDHF 300
  301 FAFKILPIVV FFSTVMSMLY YLGLMQWIIR KVGWLMLVTM GSSPIESVVA AGNIFVGQTE 360
  361 SPLLVQPYLP HVTKSELHTI MTAGFATIAG SVLGAYISFG VSSTHLLTAS VMSAPAALAV 420
  421 AKLFWPETEK PKITLKNAMK MENGDSRNLL EAATQGASSS IPLVANIAAN LIAFLALLSF 480
  481 VNSALSWFGS MFDYPQLSFE LICSYIFMPF SFMMGVDWQD RFMVAKLIGY KTFFNEFVAY 540
  541 EHLSKFINLR KAAGPKFVNG VQQYMSIRSE TIATYALCGF ANFGSLGIVI GGLTSIAPSR 600
  601 KRDIASGAMR ALIAGTIACF MTACIAGMLS DTPVAINCHH VLESSKVLSN TTEVASCCQG 660
  661 LFNSTVARGP NDVLPGGNFS LYTLKSCCNL LKPPTLNCGW IPNIP