YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCWGRNRGR LLCMLLLTFM FMVLEVVVSR VTASLAMLSD SFHMLSDVLA LVVALVAERF  60
   61 ARRTHATQKN TFGWIRAEVM GALVNAIFLT GLCFAILLEA VERFIEPHEM QQPLVVLSVG 120
  121 VAGLLVNVLG LCLFHHHSGE GQGAGHGHSH GHGHGHLAKG ARKAGRAGGE AGAPPGRAPD 180
  181 QEPDQEETNT LVANTSNSNG LKADQAEPEK LRSDDPVDVQ VNGNLIQESD SLESEDNRAG 240
  241 QLNMRGVFLH VLGDALGSVI VVVNALVFYF SWKGCTEDDF CVNPCFPDPC KSSVELMNST 300
  301 QAPMHEAGPC WVLYLDPTLC IIMVCILLYT TYPLLKESAL ILLQTVPKQI DIKHLVKELR 360
  361 DVEGVEEVHE LHVWQLAGSR IIATAHIKCE DPASYMQVAK TIKDVFHNHG IHATTIQPEF 420
  421 ASVGSKSSVV PCELACRTQC ALKQCCGTRP QVHSGKEAEK APTVSISCLE LSENLEKKPR 480
  481 RTKAEGSVPA VVIEIKNVPN KQPESSL

Type	Start	End	Confidence
Cytoplasmic	1	10	0.93
Transmembrane Helix	11	33	0.89
Non-Cytoplasmic	34	40	0.80
Transmembrane Helix	41	61	0.89
Cytoplasmic	62	78	0.87
Transmembrane Helix	79	98	0.93
Non-Cytoplasmic	99	113	0.82
Transmembrane Helix	114	134	0.94
Cytoplasmic	135	246	0.98
Transmembrane Helix	247	270	0.88
Non-Cytoplasmic	271	311	0.93
Transmembrane Helix	312	332	0.91
Cytoplasmic	333	507	0.93