YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT1B3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTEKKSFH QSLAEWKLFI YNPTSGEFLG RTSKSWGLIL LFYLVFYGFL AALFTFTMWV  60
   61 MLQTLNDEVP KYRDQIPSPG LMVFPKPPTA LDYTYSMSDP HTYKKFVEDL KNFLKPYSVE 120
  121 EQKNLTDCPG GALFHQEGPD YSACQFPVSL LQECSGVNDS NFGYSKGQPC VLVKMNRIIE 180
  181 LVPDGAPYIT CITKEENIAN IVTYPDDGLI DLKYFPYYGK KRHVGYRQPL VAVQVIFGAD 240
  241 ATKKEVTIEC QIDGTRNLKN KNERDKFLGR VSFKVIAHA

Type	Start	End	Confidence
Cytoplasmic	1	38	0.91
Transmembrane Helix	39	61	0.92
Non-Cytoplasmic	62	279	0.93