YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTRI_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVCGYLFLP WKCLVVVSLR LLFLVPTGVP VRSGDATFPK AMDNVTVRQG ESATLRCTID  60
   61 NRVTRVAWLN RSTILYAGND KWCLDPRVVL LSNTQTQYSI EIQNVDVYDE GPYTCSVQTD 120
  121 NHPKTSRVHL IVQVSPKIVE ISSDISINEG NNISLTCIAT GRPEPTVTWR HISPKAVGFV 180
  181 SEDEYLEIQG ITREQSGEYE CSASNDVAAP VVRRVNVTVN YPPYISEAKG TGVPVGQKGT 240
  241 LQCEASAVPS AEFQWFKDDK RLVEGKKGVK VENRPFLSRL TFFNVSEHDY GNYTCVASNK 300
  301 LGHTNASIML FGPGAVSEVN NGTSRRAGCI WLLPLLVLHL LLKF

Type	Start	End	Confidence
Signal Peptide	1	33	0.84
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	344	0.97