YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTAFR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQNGSFRVD SEFRYTLFPI VYSVIFVLGV VANGYVLWVF ATLYPSKKLN EIKIFMVNLT  60
   61 VADLLFLMTL PLWIVYYSNE GDWIVHKFLC NLAGCLFFIN TYCSVAFLGV ITYNRYQAVA 120
  121 YPIKTAQATT RKRGITLSLV IWISIAATAS YFLATDSTNV VPKKDGSGNI TRCFEHYEPY 180
  181 SVPILVVHIF ITSCFFLVFF LIFYCNMVII HTLLTRPVRQ QRKPEVKRRA LWMVCTVLAV 240
  241 FVICFVPHHV VQLPWTLAEL GYQTNFHQAI NDAHQITLCL LSTNCVLDPV IYCFLTKKFR 300
  301 KHLSEKFYSM RSSRKCSRAT SDTCTEVMMP ANQTPVLPLK N

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.91
Transmembrane Helix	20	41	0.93
Cytoplasmic	42	53	0.87
Transmembrane Helix	54	75	0.94
Non-Cytoplasmic	76	91	0.79
Transmembrane Helix	92	113	0.92
Cytoplasmic	114	133	0.93
Transmembrane Helix	134	154	0.94
Non-Cytoplasmic	155	185	0.96
Transmembrane Helix	186	210	0.91
Cytoplasmic	211	229	0.93
Transmembrane Helix	230	251	0.96
Non-Cytoplasmic	252	272	0.96
Transmembrane Helix	273	296	0.81
Cytoplasmic	297	341	0.89