YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOT2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.87
Transmembrane Helix	22	42	0.94
Non-Cytoplasmic	43	63	0.82
Transmembrane Helix	64	86	0.89
Cytoplasmic	87	93	0.72
Transmembrane Helix	94	112	0.90
Non-Cytoplasmic	113	119	0.61
Transmembrane Helix	120	142	0.85
Cytoplasmic	143	150	0.84
Transmembrane Helix	151	170	0.91
Non-Cytoplasmic	171	182	0.72
Transmembrane Helix	183	204	0.92
Cytoplasmic	205	250	0.96
Transmembrane Helix	251	272	0.92
Non-Cytoplasmic	273	285	0.82
Transmembrane Helix	286	305	0.89
Cytoplasmic	306	316	0.77
Transmembrane Helix	317	338	0.90
Non-Cytoplasmic	339	343	0.74
Transmembrane Helix	344	366	0.89
Cytoplasmic	367	374	0.84
Transmembrane Helix	375	397	0.88
Non-Cytoplasmic	398	409	0.89
Transmembrane Helix	410	433	0.90
Cytoplasmic	434	489	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSESSVKAT AAPPPFPLPP DGGWGWVVVC ASFISIGFSY AFPKAVTVFF NDIKDIFKTT  60
   61 SSQIAWISSI MLAVMYAGGP ISSVLVNNYG SRPVLIVGGL LCCTGMILAS FSSSVIELYL 120
  121 TVGFIGGLGL AFNLQPALTI IGKYFYRKRP LANGFAMAGS PVFLSTLAPF NQFLFNSYGW 180
  181 KGSFLILGAI FLHSCVAGCL MRPVGPSPRA AKSKSKVGSR QDSSTKRLSK VSTAEKINRF 240
  241 LDFGLFTHRG FLIYLSGNVV LFLGMFAPII FLAPYAKDKG VDDYNSAFLL SVMAFTDMFA 300
  301 RPSVGLIANT SLIRPRIQYL FSVAIMFTGI CHLLCPLAHS YTALVVYVIF FGIGFGSISS 360
  361 LLFECLMDQV GASRFSSAVG LVTIVECCPV LFGPPLAGKL LDITGQYKYL YIASGIVVLS 420
  421 SGIYLLICNA INYRLLEKER KREKARRKKS ASQASKEMEA LSRSKQDDVT VKVSNTHNPP 480
  481 SDRDKESSI