YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERD21_RAT
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFRFLGDL SHLLAIILLL LKIWKSRSCA GISGKSQVLF AVVFTARYLD LFTNYISLYN  60
   61 TCMKVVYIAC SFTTVWMIYS KFKATYDGNH DTFRVEFLVV PTAVLAFLVN HDFTPLEILW 120
  121 TFSIYLESVA ILPQLFMVSK TGEAETITSH YLFALGVYRT LYLFNWIWRY HFEGFFDLIA 180
  181 IVAGLVQTVL YCDFFYLYIT KVLKGKKLSL PA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.63
Transmembrane Helix	6	24	0.72
Cytoplasmic	25	30	0.69
Transmembrane Helix	31	49	0.64
Non-Cytoplasmic	50	60	0.54
Transmembrane Helix	61	80	0.82
Cytoplasmic	81	91	0.78
Transmembrane Helix	92	111	0.78
Non-Cytoplasmic	112	117	0.78
Transmembrane Helix	118	138	0.86
Cytoplasmic	139	146	0.85
Transmembrane Helix	147	168	0.83
Non-Cytoplasmic	169	177	0.76
Transmembrane Helix	178	199	0.93
Cytoplasmic	200	212	0.95