YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|294587
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEFSDFMSIN TMLGYSTVNQ GGKAAGAIAF GFHDILFWLD ILVLLGLILA RKIKLDPRPL  60
   61 PRFQPFKWLT VGVFVLMANL FLSDIDRPQL LTRQFDREYM VKYLGLGPFT IYDAINTYQT 120
  121 SQVRKSATPS EFTQVKNYVN KHYAALNPQF FGRAKGKNVI VIHLESFQQM SIDRKINGQE 180
  181 VTPFLNSLYH SQSTLAFDNF FNEVGQGKTS DAENMLETST FGLPQGSLFS KLGNDQTFQA 240
  241 MPAILNQRAN YSSAVFHGNI GTFWNRNNVY KHMGYQNWVS GDYFDLTGQK ATTWGLKDKL 300
  301 LFQESIPYLE QLQQPFYAKY LTVTNHTPFT LDKEDQDPNF ITTNSGSKIV DNYFITNHYL 360
  361 DQSVKEF

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.84
Transmembrane Helix	29	50	0.84
Cytoplasmic	51	64	0.86
Transmembrane Helix	65	85	0.90
Non-Cytoplasmic	86	367	0.98