YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4868341
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYWDKFVKRK VLDKHGHIFG RERIAELLGM DLASLEITAH NERKPDPPPG LLTWIMSIDV  60
   61 KYQIWKFGVI FTDNSFLYLG WYMVMSLLGH YNNFFFAAHL LDIAMGVKTL RTILSSVTHN 120
  121 GKQLVMTVGL LAVVVYLYTV VAFNFFRKFY NKSEDEDEPD MKCDDMMTCY LFHMYVGVRA 180
  181 GGGIGDEIED PAGDEYELYR VVFDITFFFF VIVILLAIIQ GLIIDAFGEL RDQQEQVKED 240
  241 METKCFICG

Type	Start	End	Confidence
Cytoplasmic	1	63	0.93
Transmembrane Helix	64	85	0.75
Non-Cytoplasmic	86	94	0.55
Transmembrane Helix	95	112	0.49
Cytoplasmic	113	122	0.42
Transmembrane Helix	123	146	0.85
Non-Cytoplasmic	147	204	0.51
Transmembrane Helix	205	224	0.94
Cytoplasmic	225	249	0.54