YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYBR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMEGYRGFL GLLVSALLVG FLSVIFVLIW VLHFREGLGW DGGALEFNWH PVLAVTGFVF  60
   61 IQGIAIIVYR LPWTWKCSKF LMKSIHAGLN AVAAILAIIS VVAVFDYHNV RKIPHMYSLH 120
  121 SWVGLTVLIL YIQQLVVGFF IFLLPWAPPS LRAIVMPIHV YSGLLLFGTV IATVLMGVTE 180
  181 KLFFVLKNPS YHSFPPEGVF TNTLGLLILV FGALIFWIVT RPQWKRPREP GSIPLQLNGG 240
  241 NADGMEGAIA ISSAHNMDAA DAELSSEGAA RKRTLGLVDT GQRSTM

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	32	0.94
Non-Cytoplasmic	33	49	0.92
Transmembrane Helix	50	73	0.88
Cytoplasmic	74	84	0.91
Transmembrane Helix	85	105	0.92
Non-Cytoplasmic	106	121	0.86
Transmembrane Helix	122	146	0.86
Cytoplasmic	147	157	0.82
Transmembrane Helix	158	178	0.92
Non-Cytoplasmic	179	198	0.91
Transmembrane Helix	199	219	0.96
Cytoplasmic	220	286	0.99