YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PD2R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNESYRCQAA TWVERGSSAT MGGVAFSAGL LGNLLALVLL ARSGLGSCRP GPLHPPPSVF  60
   61 YVLVCGLTVT DLLGKCLISP MVLAAYAQNR SLKELLPASG NQLCEAFAFL MSFFGLASTL 120
  121 QLLAMALECW LSLGHPFFYQ RHITARRGVL VAPVAGAFSL AFCALPFAGF GKFVQYCPGT 180
  181 WCFIQMIHKK RSFSVIGFSV LYSSLMALLV LATVVCNLGA MSNLYAMHRR QRHHPRRCSR 240
  241 DRAQSGSDYR HGSPNPLEEL DHFVLLALTT VLFTMCSLPL IYRAYYGAFK LVDRADGDSE 300
  301 DLQALRFLSV ISIVDPWIFI IFRTSVFRML FHKTFTRPLI YRNWCSHSWQ TNMESTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.58
Transmembrane Helix	19	41	0.89
Cytoplasmic	42	58	0.50
Transmembrane Helix	59	79	0.77
Non-Cytoplasmic	80	105	0.68
Transmembrane Helix	106	131	0.78
Cytoplasmic	132	147	0.68
Transmembrane Helix	148	170	0.91
Non-Cytoplasmic	171	203	0.83
Transmembrane Helix	204	227	0.87
Cytoplasmic	228	262	0.88
Transmembrane Helix	263	282	0.96
Non-Cytoplasmic	283	303	0.81
Transmembrane Helix	304	327	0.82
Cytoplasmic	328	357	0.89