YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RFNG_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVRRVLCR ACLALAAVLA VLLLLPLPLP LPLPLPRAPA PDPGRVPTGS LTLEVSRLQP  60
   61 DDVFIAVKTT RKNHGPRLRL LLRTWISRAP RQTFIFTDGD DPELQLLAGS QMINTNCSAV 120
  121 RTRQALCCKM SVEYDKFIES GRKWFCHVDD DNYVNPKSLL HLLSTFSSNQ DIYLGRPSLD 180
  181 HPIEATERVQ GGGTSNTVKF WFATGGAGFC LSRGLALKMS PWASLGSFMS TAERVRLPDD 240
  241 CTVGYIVEGL LGARLLHSPL FHSHLENLQK LPSGAVLQQV TLSYGGPENP HNVVNVAGSF 300
  301 SIRQDPTRFQ SVHCLLYPDT HWCPMKNRGK EAFQ

Type	Start	End	Confidence
Signal Peptide	1	34	0.93
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	334	0.96