YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ILRL1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.42
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGKWRMGLW ALAILTVPMY FIVTEGRKTS WGLENEALIV RCPQRGGAIN PVEWYYSNTN  60
   61 ERIPTQKRNR IFVSRDRLKF LPAKVEDSGI YTCVIRSPES IKTGSLNVTI YKRPPNCKIP 120
  121 DYMMYSTVDG SDKNSKITCP TIALYNWTAP VQWFKNCKAL QGPRFRAHMS YLFIDKVSHV 180
  181 DEGDYTCRFT HTENGTNYIV TATRSFTVEE KGFSTFPVIT NPPHNYTVEV EIGKTANIAC 240
  241 SACFGTASQF VAVLWQINKT RIGSFGKARI QEEKGPNKSS SNGMICLTSL LRITGVTDKD 300
  301 FSLKYDCVAM NHHGVIRHPV RLRRKQPIDH QSTYYIVAGC SLLLMFINVL VIVLKVFWIE 360
  361 VALFWRDIMA PYKTQNDGKL YDAYIIYPRV FRGSAAGTGS VEYFVHYTLP DVLENKCGYK 420
  421 LCIYGRDLLP GQDAATVVES SIQNSRRQVF VLAPHMMHSK EFAYEQEIAL HSALIQNNSK 480
  481 VILIEMEPMG EASRLQLGDL QDSLQHLVKM QGTIKWREDH VADKQSLSSK FWKHVRYQMP 540
  541 VPKRPPKMAS VAAPLSGKVC LDLKHF

Type	Start	End	Confidence
Signal Peptide	1	23	0.43
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	333	0.88
Transmembrane Helix	334	359	0.86
Cytoplasmic	360	566	0.81