YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TNFL6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQPVNYPCP QIYWVDSSAT SPWAPPGSVF SCPSSGPRGP GQRRPPPPPP PPSPLPPPSQ  60
   61 PPPLPPLSPL KKKDNIELWL PVIFFMVLVA LVGMGLGMYQ LFHLQKELAE LREFTNHSLR 120
  121 VSSFEKQIAN PSTPSETKKP RSVAHLTGNP RSRSIPLEWE DTYGTALISG VKYKKGGLVI 180
  181 NEAGLYFVYS KVYFRGQSCN SQPLSHKVYM RNFKYPGDLV LMEEKKLNYC TTGQIWAHSS 240
  241 YLGAVFNLTV ADHLYVNISQ LSLINFEESK TFFGLYKL

Type	Start	End	Confidence
Cytoplasmic	1	77	0.95
Transmembrane Helix	78	99	0.93
Non-Cytoplasmic	100	278	0.96