YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XBP1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVVAAAPSA ASAAPKVLLL SGQPASGGRA LPLMVPGPRA AGSEASGTPQ ARKRQRLTHL  60
   61 SPEEKALRRK LKNRVAAQTA RDRKKARMSE LEQQVVDLEE ENQKLQLENQ LLREKTHGLV 120
  121 IENQELRTRL GMNALVTEEV SEAESKGNGV RLVAGSAESA ALRLRAPLQQ VQAQLSPPQN 180
  181 IFPWILTLLP LQILSLISFW AFWTSWTLSC FSNVLPQSLL IWRNSQRSTQ KDLVPYQPPF 240
  241 LCQWGPHQPS WKPLMNSFVL TMYTPSL

Type	Start	End	Confidence
Signal Peptide	1	27	0.73
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	180	0.90
Transmembrane Helix	181	203	0.77
Cytoplasmic	204	267	0.80