YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12621138, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFFPILCLV LFFSHGVASR QRSHSKEKKK SKESSVGAVG TSRSRDFAFR LYRALASEAP  60
   61 GQNVFFSPMS VSMSLGMLSL GSGLKTKAQI LEGLGLSLQQ GQEDMLHKGF QQLLQQFSQP 120
  121 SDGLQLSLGS ALFTDPAVHI RDHFLSAMKT LYMSDMFSTN FGNPESAKKQ INDYVAKKTN 180
  181 GKIVDLIKDL DSTHVMVVVN YIFFKAKWQT AFSSTNTHKM DFHVTPKKTI QVPMMNREDI 240
  241 YSYILDQNIS CTVVGIPYQG NTFALFILPS EGKMKRVEDG LDERTLRNWL KMFTKRQLDL 300
  301 YLPKFSIEGT YKLEKILPKL GIQDIFTTHA DLSGLTDHTN IKLSEMVHKS MVEVDESGTT 360
  361 AAASTGILFT LRSARPSSLK VEFTRPFLVV IMDGTNLYFI GKVIQP

Type	Start	End	Confidence
Signal Peptide	1	19	0.98
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	406	0.99