YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SLIT1_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTPQRGSS SGLSRPELWL LLWAAAWRLG ATACPALCTC TGTTVDCHGT GLQAIPKNIP  60
   61 RNTERLELNG NNITRIHKND FAGLKQLRVL QLMENQIGAV ERGAFDDMKE LERLRLNRNQ 120
  121 LQVLPELLFQ NNQALSRLDL SENSLQAVPR KAFRGATDLK NLQLDKNQIS CIEEGAFRAL 180
  181 RGLEVLTLNN NNITTIPVSS FNHMPKLRTF RLHSNHLFCD CHLAWLSQWL RQRPTIGLFT 240
  241 QCSGPASLRG LNVAEVQKSE FSCSGQGEAA QVPACTLSSG SCPAMCSCSN GIVDCRGKGL 300
  301 TAIPANLPET MTEIRLELNG IKSIPPGAFS PYRKLRRIDL SNNQIAEIAP DAFQGLRSLN 360
  361 SLVLYGNKIT DLPRGVFGGL YTLQLLLLNA NKINCIRPDA FQDLQNLSLL SLYDNKIQSL 420
  421 AKGTFTSLRA IQTLHLAQNP FICDCNLKWL ADFLRTNPIE TTGARCASPR RLANKRIGQI 480
  481 KSKKFRCSAK EQYFIPGTED YHLNSECTSD VACPHKCRCE ASVVECSGLK LSKIPERIPQ 540
  541 STTELRLNNN EISILEATGL FKKLSHLKKI NLSNNKVSEI EDGTFEGATS VSELHLTANQ 600
  601 LESVRSGMFR GLDGLRTLML RNNRISCIHN DSFTGLRNVR LLSLYDNHIT TISPGAFDTL 660
  661 QALSTLNLLA NPFNCNCQLA WLGDWLRKRK IVTGNPRCQN PDFLRQIPLQ DVAFPDFRCE 720
  721 EGQEEVGCLP RPQCPQECAC LDTVVRCSNK HLQALPKGIP KNVTELYLDG NQFTLVPGQL 780
  781 STFKYLQLVD LSNNKISSLS NSSFTNMSQL TTLILSYNAL QCIPPLAFQG LRSLRLLSLH 840
  841 GNDVSTLQEG IFADVTSLSH LAIGANPLYC DCHLRWLSSW VKTGYKEPGI ARCAGPPEME 900
  901 GKLLLTTPAK KFECQGPPSL AVQAKCDPCL SSPCQNQGTC HNDPLEVYRC TCPSGYKGRN 960
  961 CEVSLDSCSS NPCGNGGTCH AQEGEDAGFT CSCPSGFEGL TCGMNTDDCV KHDCVNGGVC1020
 1021 VDGIGNYTCQ CPLQYTGRAC EQLVDFCSPD LNPCQHEAQC VGTPEGPRCE CVPGYTGDNC1080
 1081 SKNQDDCKDH QCQNGAQCVD EINSYACLCA EGYSGQLCEI PPAPRNSCEG TECQNGANCV1140
 1141 DQGSRPVCQC LPGFGGPECE KLLSVNFVDR DTYLQFTDLQ NWPRANITLQ VSTAEDNGIL1200
 1201 LYNGDNDHIA VELYQGHVRV SYDPGSYPSS AIYSAETIND GQFHTVELVT FDQMVNLSID1260
 1261 GGSPMTMDNF GKHYTLNSEA PLYVGGMPVD VNSAAFRLWQ ILNGTSFHGC IRNLYINNEL1320
 1321 QDFTKTQMKP GVVPGCEPCR KLYCLHGICQ PNATPGPVCH CEAGWGGLHC DQPVDGPCHG1380
 1381 HKCVHGKCVP LDALAYSCQC QDGYSGALCN QVGAVAEPCG GLQCLHGHCQ ASATRGAHCV1440
 1441 CSPGFSGELC EQESECRGDP VRDFHRVQRG YAICQTTRPL SWVECRGACP GQGCCQGLRL1500
 1501 KRRKLTFECS DGTSFAEEVE KPTKCGCAPC A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle