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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FAT2_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLVLLGLAI LLLHRAACEK SLEETIPPLS WRFTHSLYNA TIYENSAPKT YVESPVKMGM  60
   61 YLAEPHWVVK YRIISGDAAG VFKTEEHVVG NFCFLRIRTK SSNTALLNRE VRDSYTLIVQ 120
  121 ASDKSLEFEA LTQVVVHILD QNDLKPLFSP PSYRVTISED RPLKSPICKV TATDADLGQN 180
  181 AEFYYAFNAR SEVFAIHPTS GVVTVAGKLN VTRRGKYELQ VLAVDRMRKI SEGNGFGNLA 240
  241 SLVIRVEPVH RKPPAINLVV LNPPEGDEGD IYAIVTVDTN GSGAEVDSLE VVGGDPGKYF 300
  301 KVLRSYAQGN EFNLVAVRDI NWAEHPHGFN ISLQTHSWSR FPPHSIIRAF HLPSWKLANL 360
  361 RFEKAVYRVK LSEFSPPGSR VALVKVTTAL PNLRYSLKPS SRNTAFKLNA RTGLITTTKL 420
  421 VDFHEQNQYQ LHVKTSLGQA TTTVIIDIVD CNNHAPVFNR SSYEGTLDEN IPPGTSVLTV 480
  481 TATDQDHGDN GHITYSIAGP KAVPFSIDPL LGVISTTKPM DYELMKRIYT FRVRASDWGS 540
  541 PFRQEKEVSV SLRLKNLNDN QPMFEEVNCT VSLRQDVPVG KSIMAVSAID MDELQNLKYE 600
  601 IVSGNEQDYF HLNHFSGVIS LKRSFMNLTA VRPTIYSLKI TASDGKNYAS PTTLKVTVVK 660
  661 DPHSEVPVQC DKTGVLTHIT KTILQSAGLQ SQELGEEEFT SLSNYQINHH SPQFEDHFPQ 720
  721 SIDILEQVPI NTPLARLAAT DPDTGFHGKL VYVISDGNEE GCFDIELETG LLMVAAALDY 780
  781 ETTSFYVLNV TVYDLGTPPK SSWKLLTVTV KDWNDNPPRF PPGGYQLTIS EDTEVGTTIA 840
  841 ELKTEDADSE DNRRVRYTLL TPTEKFSLHP FTGELVVTGH LDRESESQYI LKAEARDQPT 900
  901 KGHQLFSVTD LIVTLEDIND NPPQCITEHR RLKVPEDMPL GTVLTFLDAS DPDLGPAGEV 960
  961 KYILVEDAHG TFQVHPMTGA LSLEKELDFE RRAGYNLSFW ASDSGKPLSR RTLCHVEVLV1020
 1021 MDVNENLHSP HFSSFVYQGQ VQENSPAGTP VMVVTAQDDD SGLDGELQYF LRAGTGLETF1080
 1081 SINQDTGMLE TLAPLDREFT PYYWLTVLAV DRGSVPLSAV TEVYIEVTDI NDNIPSMSRP1140
 1141 VFYPSVLEDA PLGTSVLQLE AWDPDSSSQG KLTFNLTSGN HLGHFIVHPF TGLLTTAKQL1200
 1201 DRENKDEYVL EVTVQDNGDP SLRSTSRVVV CILDVNDNPP MFSHKLFNVR LSERLSPLSP1260
 1261 EPVYRLVASD PDEGLNGSVT YSIEESDEES FRIDPVTGVV SSSSTFAAGE YNILTIKATD1320
 1321 SGQPALSTSV RLHIEWIPQP RPSSIPLSFD ESYYSFTVME TDPVNHMVGV ISVEGRPGLF1380
 1381 WFHISDGDKD MDFDIEKTTG SIVIARPLDT RRKSSYNLTV EVTDGFHTIA TQVHIFMIAN1440
 1441 INHHRPQFLQ DHYEIRVPQD TLPGVELLRV QATDQDHGKG LIYTILSSQD PGSANLFQLD1500
 1501 PSSGVLVTVG TLELHSGPSQ HILTVMVRDQ EMPIKRNFVW VTIHVEDGNL HSPHFTQLRY1560
 1561 EANVPDTTAP GTELLQVRAV DADRGANAEI HYSFLKGNSD GFFNIDSLLG IITVAQRLYH1620
 1621 VHLTRHALTV KAEDQGSPRR HDLALVVIHV HPSDSSAPVF SKDEYFIEIP ESVPIGSPIL1680
 1681 LLSAGSSSEV TYELREGNKD SVFSMNSYSG LISTQKRLDH EKVPSYRLRI RGSNMAGVFT1740
 1741 EVVALVYIID ENDNPPAFGK PTFLGHISEA APLHSLILGE DNSPLVVRAS DSDREANSLL1800
 1801 VYKILEPEAL KFFKIDPSMG TLTTTSELDF EDTPLFQFNI YVHDQGTPIL FAPRSAKVII1860
 1861 HVRDVNDSPP RFSEQIYEVA VVEPIHPGMG LLTVQAEDND SRVTYSIKTS NADEAVTIHP1920
 1921 TTGQISVVNP ATLRLFQKFS IRASDGLYHD TAVVKISLTQ VLDKSLQFDQ DVYRARVTEN1980
 1981 TPHRKALVIL GVHGNHLNDT LSYFLLNGTD LFHMIESAGV LQTRGGTFDR EQQDTHEVAV2040
 2041 EVRDNRVPQR VAQALVRVSV EDVNDNIPEF QHLPYYTVIQ DGTEPGDVLF QVSATDKDLG2100
 2101 ANGSVTYGFA EDYAYFRIDP YVGDISLKKP FDYQALNKYH LRVIARDSGI PPLQTEVEVH2160
 2161 VTVRNKSNPL FQSPYYKVKV PENITLYTPI LHTQARSPEG LRLIYNIVEE EPLMLFTTDF2220
 2221 KTGVLTVTGP LDYESKNKHV FTVRATDTAL GSFSEATVEV LVEDINDNPP TFSQLVYTTS2280
 2281 VSEGSPAQTP VIQLLASDQD SGQNQDVSYQ IVEDGSDVSK FFRINGSTGE IFTIQELDYE2340
 2341 THQHFRVKVR AMDKGDPPLT GETLVVVNVS DINDNPPKFR EPQYEANVSE LATCGHLVLK2400
 2401 VQALDPDIGD TSRLEYLILS GNQDRHFSIN STSGIISMFN LCKKQLDSSY NLRVGASDGV2460
 2461 FRATVPVYIN TTNANKYSPE FQQNVYEAEL AENAKVGTKV IELLAIDKDS GPYGTVDYTI2520
 2521 INKLAGERFF INPRGQITTL QKLDRENSTE RVIAIKVMAR DGGGKVAFCT VKIILTDEND2580
 2581 NAPQFKASGY TVSIPSNVSR DSPIIQVLAY DADEGRNADV TYSVDSTEDL AEEIIEVNPT2640
 2641 TGVVKVKESL VGLENRAVDF NIKAQDGGPP HWDSLVPVRL QVVPNEIPLP KFSEPLYTFS2700
 2701 APEDLPEGSE IGSVKAVAAQ DPIIYSLVQG TTPESNSDDV FSLDQDTGVL KVRKAMDHES2760
 2761 TKWYQIDLMA HCPHEDTDLV SLVSVSIQVE DVNDNRPVFE ADPYKAFLTE NMPGGTTVIQ2820
 2821 VTANDQDTGS DGQVSYRLSV EPGSNIHELF AVDSESGWIT TLQELDCETQ QTYRFYVVAF2880
 2881 DHGQTIQLSS QALVEVSITD ENDNPPRFAS EDYRGSVVEN NEPGELVATL KTLDADVSDQ2940
 2941 NRQVTCYITE GDPLGQFSIS QVGDEWRISS RKTLDREHIA KYLLRVTASD GKFQASVPVE3000
 3001 VFVVDINDNS PQCSQLLYTG KVREDVTPGH FILKVSAIDV DMDTNAQITY SLHGPGAQEF3060
 3061 KLDPHTGELT TLTVLDRERK DVYNLVAKAT DGGGQSCQAE VTLHIEDVND NAPRFFPSHC3120
 3121 DVAVFDNTTV KTPVAVVFAR DPDQGANAQV VYSLTDSADG QFSIDATSGV IRLEKPLQVR3180
 3181 ASSAVELTVR ASDLGTPIPL STLGTVTVSV VGLEDYLPIF LNAEHSTQVP EDAPIDMEVL3240
 3241 HLATLTRPGS EKTGYHITGG NEQGKFRLDA HTGILYVNGS LDFETNPKYF LSIECSRKSS3300
 3301 SSLSDVTTIV INVTDVNEHH PRFTHDLYTV RVLENAVVGD VILTVSASDD DGPVNSAITY3360
 3361 SLVGGNQLGH FTINPKKGKL QVAKALDWEQ TPSYSLRLRA TDSGQPPLHE DTEVAVEVVD3420
 3421 VNDNPPRFFQ LNYSTSVQEN SPIGIKVLQL ILDDPDSPQN GPPYFFRITE GNTGSVFRVT3480
 3481 PDGWLVTAAS LSKKAREWYQ LHIEVSDSGL PPLSSSTLVR VQVTEQSRYP PSTLPLEISI3540
 3541 TKGEEEFQGG MIGKIHATDR DPQDTLTYSL EQEGGLDRYF TVGASDGKII ASQGLPHGRY3600
 3601 SFNVTVSDGT FTTTTGVHVH VWHMEPEVPQ QAVWLGFHQL TPEELVSDHW RNLQRFLSNL3660
 3661 LDVKRANIHL ASLQPAEVTA GVDVLLVFER HSGTSYDLQE LASAIAHSVR EIEHSVGIRM3720
 3721 RSALPVVPCQ GQSCQDQTCQ ETVSLEPRVG PSYSTARLSI LTPRHHLGRN CSCNGTTLRF3780
 3781 SGQSYVQYRP LEAQNWQIHF YLKTLQPWAL LMFTNETASI SLKLANGFSH LEYHCPGGFY3840
 3841 GNLSSRYPVN DGQWHSMLLE ERDTSVHLLV DITDNASLVI PEECQGLRTE RQLLLGGLVP3900
 3901 SNPSSNVSLG FEGCLDAVVV NGERLELLGR EKKMEGRLET WALSQCCWPG TACSQSPCLN3960
 3961 GGSCSPALGS GYLCRCPPPF SGRNCELGRE NCTSAPCQEG GTCVSSPEGT SCNCPHPYTG4020
 4021 DRCEMEARGC SGGHCLITPE IKRGDWGQQE FLVITVALPL VIIATVGLLL YCRRRKSHKP4080
 4081 VTMEDPDLLA RSIGVDTQAS PAIELDPLNT SSCNNLNQPE PSKTSVPNEL VTFGPSSKQR4140
 4141 PMVCSVPPRL PPAAVSSHPG HEPIIKRTWS GEELVYPSGA AVWPPTYSRK KHWEYPHPET4200
 4201 MQGTLPPSPR RHVGPAVMPD PTGLYGGFPF PLELENKRAP LPPRYSNQNL EDLMPPRPPS4260
 4261 PREHLLAPCL NEYTAISYYH SQFRQGGGGP CLAEGGYKGV SMRLSRAGPS YADCEVNGGP4320
 4321 ATGRSQPRAP PNYEGSDMVE SDYGSCEEVM F

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle