YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190358594, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTCGKYDR QVDWGSEYIT SMNFHDMDLQ LNATNNSVVK MSKTTLNGYP IPVIMFIVGV  60
   61 VGNVIAIVVL RKSRKEQKET TFYTLVCGLA VTDLLGTLLA SPVTIATYVK GEWPGGMPLC 120
  121 QYSGFILLFF SLAGLSIICA MSVERYLAIN HAYFYNHYVD QRVAGLTLGG IYVSNALFCA 180
  181 LPSMGLGSVV IQHPGTWCFI DWHNKTDTTT ATFSYMYASF SSVLILATVV CNVLVCAALI 240
  241 MMHKRFVRRT SLGTDQGRVA EIRRRRSFAR LAAAEIQMVI VLIATSTVVL ICSTPLVVQV 300
  301 FVNQLFNSAA DSSARPNPDP DLKAIRIASV NPILDPWIYI LLRKTVVQKI LEKIKCLFCR 360
  361 IGGRSHRRNT SDFHCDNDLR TSSVVSRDLP SMGLPELPEV ISTSQTYLYP LEAGQGMGCC 420
  421 GDSVPSRTCS TSTEQTLLQD SQVADFSSGE NRTEKSTDFE ESSLCEHSNT NEEQCSKHQP 480
  481 LQVTFTDETL SFQERTI

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.97
Transmembrane Helix	49	70	0.92
Cytoplasmic	71	80	0.92
Transmembrane Helix	81	105	0.88
Non-Cytoplasmic	106	121	0.89
Transmembrane Helix	122	143	0.90
Cytoplasmic	144	163	0.88
Transmembrane Helix	164	187	0.84
Non-Cytoplasmic	188	219	0.87
Transmembrane Helix	220	242	0.91
Cytoplasmic	243	272	0.94
Transmembrane Helix	273	298	0.85
Non-Cytoplasmic	299	497	0.97