YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126631630, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSMNTSYQM VNFSCSINMT DWETAINHLY TYFYLIIFIP GVLSNTLALW VLCRFVSKKT  60
   61 KAIIFMINLT VADLAHVLSL PLRIHYYIQQ DWPFGNELCL LCFYLKYLNM YASIAFLVCI 120
  121 SIQRCGFLMH PFHARRWKSR YDVCISITVW VVVGLCCSPF ILMRSKSNSS LGNRSCFKDL 180
  181 PMRKLNFQLA ISMMAAAELF GFLGPLFIIG FCNYLIENSM RQRNKQQQST SDTRKALRMV 240
  241 RVCTGVFLFC FAPYHINFLL YLMVSQSIIT NCEASQVIKQ FHPISLCMAS LNCCLNPLIY 300
  301 YFLTTEFKQQ LSHHGSSVLR GRLMSMESTS SYKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.92
Transmembrane Helix	31	53	0.92
Cytoplasmic	54	62	0.88
Transmembrane Helix	63	85	0.90
Non-Cytoplasmic	86	106	0.89
Transmembrane Helix	107	128	0.85
Cytoplasmic	129	142	0.84
Transmembrane Helix	143	163	0.96
Non-Cytoplasmic	164	194	0.94
Transmembrane Helix	195	216	0.95
Cytoplasmic	217	236	0.98
Transmembrane Helix	237	258	0.89
Non-Cytoplasmic	259	283	0.87
Transmembrane Helix	284	303	0.65
Cytoplasmic	304	334	0.67