YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCG4_RAT
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRCDRGLQM LLTTAGAFAA FSLMAIAIGT DYWLYSSAHI CNGTNLTMDD GPPPRRARGD  60
   61 LTHSGLWRVC CIEGIYKGHC FRINHFPEDN DYDHDSSEYL LRIVRASSVF PILSTILLLL 120
  121 GGLCIGAGRI YSRKNNIVLS AGILFVAAGL SNIIGIIVYI SSNTGDPSDK RDEDKKNHYN 180
  181 YGWSFYFGAL SFIVAETVGV LAVNIYIEKN KELRFKTKRE FLKASSSSPY SRMPSYRYRR 240
  241 RRSRSSSRST EASPSRDASP VGLKITGAIP MGELSMYTLS REPLKVTTAA SYSPDQDAGF 300
  301 LQMHDFFQQD LKEGFHVSML NRRTTPV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.86
Transmembrane Helix	10	29	0.93
Non-Cytoplasmic	30	108	0.95
Transmembrane Helix	109	128	0.94
Cytoplasmic	129	136	0.80
Transmembrane Helix	137	160	0.91
Non-Cytoplasmic	161	185	0.95
Transmembrane Helix	186	207	0.94
Cytoplasmic	208	327	0.98