YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCG8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLKRWNEE RGLWCEKGVQ VLLTTIGAFA AFGLMTIAIS TDYWLYTRAL ICNTTNLTAG  60
   61 DDGPPHRGGS GSSEKKDPGG LTHSGLWRIC CLEGLKRGVC VKINHFPEDT DYDHDSAEYL 120
  121 LRVVRASSIF PILSAILLLL GGVCVAASRV YKSKRNIILG AGILFVAAGL SNIIGVIVYI 180
  181 SANAGEPGPK RDEEKKNHYS YGWSFYFGGL SFILAEVIGV LAVNIYIERS REAHCQSRSD 240
  241 LLKAGGGAGG SGGSGPSAIL RLPSYRFRYR RRSRSSSRGS SEASPSRDAS PGGPGGPGFA 300
  301 STDISMYTLS RDPSKGSVAA GLASAGGGGG GAGVGAYGGA AGAAGGGGTG SERDRGSSAG 360
  361 FLTLHNAFPK EAASGVTVTV TGPPAAPAPA PPAPAAPAPG TLSKEAAASN TNTLNRKTTP 420
  421 V

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	40	0.96
Non-Cytoplasmic	41	128	0.97
Transmembrane Helix	129	148	0.95
Cytoplasmic	149	156	0.83
Transmembrane Helix	157	180	0.92
Non-Cytoplasmic	181	205	0.92
Transmembrane Helix	206	227	0.92
Cytoplasmic	228	240	0.95
Transmembrane Helix	241	260	0.55
Non-Cytoplasmic	261	421	0.57