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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NMD3A_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLSLWWLL SRVCLLLPPP CALVLAGVPS SSSHPQPCQI LKRIGHAVRV GAVHLQPWTT  60
   61 APRAASRAQE GGRAGAQRDD PESGTWRPPA PSQGARWLGS ALHGRGPPGS RKLGEGAGAE 120
  121 TLWPRDALLF AVENLNRVEG LLPYNLSLEV VMAIEAGLGD LPLMPFSSPS SPWSSDPFSF 180
  181 LQSVCHTVVV QGVSALLAFP QSQGEMMELD LVSSVLHIPV LSIVRHEFPR ESQNPLHLQL 240
  241 SLENSLSSDA DVTVSILTMN NWYNFSLLLC QEDWNITDFL LLTENNSKFH LESVINITAN 300
  301 LSSTKDLLSF LQVQMDNIRN STPTMVMFGC DMDSIRQIFE MSTQFGLSPP ELHWVLGDSQ 360
  361 NVEELRTEGL PLGLIAHGKT TQSVFEYYVQ DAMELVARAV ATATMIQPEL ALLPSTMNCM 420
  421 DVKTTNLTSG QYLSRFLANT TFRGLSGSIK VKGSTIISSE NNFFIWNLQH DPMGKPMWTR 480
  481 LGSWQGGRIV MDSGIWPEQA QRHKTHFQHP NKLHLRVVTL IEHPFVFTRE VDDEGLCPAG 540
  541 QLCLDPMTND SSMLDRLFSS LHSSNDTVPI KFKKCCYGYC IDLLEQLAED MNFDFDLYIV 600
  601 GDGKYGAWKN GHWTGLVGDL LSGTANMAVT SFSINTARSQ VIDFTSPFFS TSLGILVRTR 660
  661 DTAAPIGAFM WPLHWTMWLG IFVALHITAI FLTLYEWKSP FGMTPKGRNR NKVFSFSSAL 720
  721 NVCYALLFGR TAAIKPPKCW TGRFLMNLWA IFCMFCLSTY TANLAAVMVG EKIYEELSGI 780
  781 HDPKLHHPSQ GFRFGTVRES SAEDYVRQSF PEMHEYMRRY NVPATPDGVQ YLKNDPEKLD 840
  841 AFIMDKALLD YEVSIDADCK LLTVGKPFAI EGYGIGLPPN SPLTSNISEL ISQYKSHGFM 900
  901 DVLHDKWYKV VPCGKRSFAV TETLQMGIKH FSGLFVLLCI GFGLSILTTI GEHIVHRLLL 960
  961 PRIKNKSKLQ YWLHTSQRFH RALNTSFVEE KQPRSKTKRV EKSRWRRWTC KTEGDSELSL1020
 1021 FPRSNLGPQQ LMVWNTSNLS HDNQRKYIFN DEEGQNQLGT QAHQDIPLPQ RRRELPASLT1080
 1081 TNGKADSLNV TRSSVIQELS ELEKQIQVIR QELQLAVSRK TELEEYQKTN RTCES

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle