YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147899396, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.92
Transmembrane Helix	92	112	0.82
Non-Cytoplasmic	113	119	0.69
Transmembrane Helix	120	141	0.74
Cytoplasmic	142	161	0.78
Transmembrane Helix	162	183	0.76
Non-Cytoplasmic	184	186	0.52
Transmembrane Helix	187	205	0.76
Cytoplasmic	206	210	0.66
Transmembrane Helix	211	232	0.78
Non-Cytoplasmic	233	239	0.54
Transmembrane Helix	240	259	0.66
Cytoplasmic	260	282	0.86
Transmembrane Helix	283	303	0.85
Non-Cytoplasmic	304	307	0.77
Transmembrane Helix	308	328	0.66
Cytoplasmic	329	341	0.72
Transmembrane Helix	342	361	0.68
Non-Cytoplasmic	362	378	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSSRLLTLR PQICSARFAV LTRRHENITA AFCRPGSCFN TSDEHKCRSR TPLVAGHCYG  60
   61 RRFFSLTPAG IVNAAPASVQ PYLRLMRLDK PIGTWLLYLP CTWSIGLAAD PGCLPDLRML 120
  121 TLFGVGALLM RGAGCTINDM WDKDFDKKVS RTATRPIASG DITRFQALVF LGGQLSLALG 180
  181 VLLSLNYYSI ALGAASLSLV VTYPLMKRIT YWPQFILGLT FNWGALLGWS AVKGSCDWSV 240
  241 CLPLYVSGVM WTLIYDTIYA HQDKDDDLKV GVKSTALRFQ ENTKLWLSGF TGAMLSGLLL 300
  301 AGVNADQTAP YYCAVSAVAL HLAHQIYSVD INRPEDCWKK FASNRNLGLL LFLGIVAGNL 360
  361 WKKRSDEQYE TQLNSISH