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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SRBP2_DANRE
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASEFMDTM DPSLSELGDE FTLGDIDEML QFVSNQVDFP DIFEDQMGGG ATARTLPQAV  60
   61 PSAILTPPHT PVQTSSQTHT QTLTQAHTQT HTQTHTQTRT PPVLQPRPQP ITQVQTQTFP 120
  121 MQTLAVQTQA QPQTVMITPT ATPSRFIQNQ VICQQNNATS FQVLQPQMQS IMTSPQVQPM 180
  181 TIQHQRVLTP AGQTIQTLST APTTVHTMSQ QVPVLVHQPQ ILKTDSLLLT TKPDGTQVLS 240
  241 TVQSPTGITT LTTPIQTTAL QMPTLMSSNI LTTVPVVMGG GDKLPIKQLS SGPAHNIGGA 300
  301 RVGVEQSPVV GPGGVVKEGE RRTTHNIIEK RYRSSINDKI LELRDLVLGN DAKMHKSGVL 360
  361 RKAIDYIKYL QQVNHKLRQE NLTLKMANQK NKSACVSDVD LELKAEVSLI SPPPSDSGSS 420
  421 SPAQLSPYCI DSEPGSPLLE HEQLKSEPDS PSCVGVMDRS RLLLCALSFL CLSLNPLPSL 480
  481 LGAEAPAGSP EVAGHGPTRT LFSLPAQTQS FGAWLWCVLP FLLVWVVSGV GVVWGCVRVL 540
  541 YLWEPVTPLH SPTSVRFWRH RKQADLQLYR GDYAGAVLSL QTCLSVLSRV LPVTTLDIMC 600
  601 SLSWNLIRYC LRRPAPLGWL VRLVGGRHEG EESQTSSRDA ALVYHKLSQL QLTGQMERRP 660
  661 LWGVCVSLSA VNLCESAEGK LTATQQVQVY VTAAISVRAA LGKHLTCLPA YLLSCAEALT 720
  721 CQSDSKPLPD CLRWIFTPLG RQFFLSCDWS VRSESDGQIF TSARDKADPI AQLHRCFCQK 780
  781 LLERATHTLI EPQSREDAGE FTGVLEFLQL LNSCTEDSAP STAPFPALAN QSSTSVRDPV 840
  841 CRWWASVLTA AVHWLQGDDA SVRSLLAEAE RMPRALHTLD HPLPKAVLAL CKAVQMSVCP 900
  901 QKGEGVVSCL SHCQRASAQL HISVCQSHNN TWLHKGVELL VCDLLLTLRT SLWQRGGGSN 960
  961 GEPGPAPGSQ LSGFQRDLSS LRRLGQAHRQ AQHKLFLHET TVRLMAGASP TRTHQLLRHR1020
 1021 THNYTTTDGE CVLGERERAH AILLACRHLP LPLLTPPGHR ARLLAEAKRT LERVGDRRSL1080
 1081 QDCQHILLRL SGGTTIAAS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle