YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZP3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPSCLLFLC LLLCGGPELC YPQTQWLLPG GTPTPAGSSS PVEVECKEAE LVVTVRRDLF  60
   61 GTGKLVQPGD LTLGSEGCQP LVAVDTDVVR LNAQLHECSS GVQVTEDALV YNTFLLHDPR 120
  121 PVNGLSILRT NRVEVPIECR YPRQGNVSSH PIQPTWVPFS ATVSSEEKLA FSLRLMEEDW 180
  181 NTEKSSPTFH LGEVAHLQAE VQTGSHLPLQ LFVDHCVATP SPLPGQNSSP HHFIVDSHGC 240
  241 LVDGLSESFS AFQVPRPRPE TLQFTVDVFH FANSSRNTVY ITCHLKVAPA NQIPDKLNKA 300
  301 CSFNKTSQSW LPVEGDADIC DCCSNGNCSN SSSSEFETHE PAQWSTLVSR NRRHVTDEAD 360
  361 VTVGPLIFLG KANDQAVEGW TSSAQTSVAL GLGLATVAFL TLAAIVLGVT RKCHTSSYLV 420
  421 SLPQ

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	387	0.99
Transmembrane Helix	388	409	0.91
Cytoplasmic	410	424	0.91