YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCG1_RAT
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTKTAKVR VTLFFILAGG VLAMVAVVTD HWAVLSPHLE HHNETCVAAH FGLWRICTTW  60
   61 VAMHNQDKNC DGTIPAGEKN CSYFRHFNPG ESSEIFEFTT QKEYSISAAA IAIFSLGFII 120
  121 IGSICAFLSF GNKRDYLLRP ASMFYAFAGL CLIVSVEVMR QSVKRMIDSE DTVWIEYYYS 180
  181 WSFACACAGF TLLFLGGLFL LLFSLPRMPQ NPWESCMDTE SEH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.87
Transmembrane Helix	11	33	0.85
Non-Cytoplasmic	34	105	0.95
Transmembrane Helix	106	130	0.90
Cytoplasmic	131	140	0.74
Transmembrane Helix	141	159	0.93
Non-Cytoplasmic	160	179	0.86
Transmembrane Helix	180	203	0.93
Cytoplasmic	204	223	0.92