YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1771577, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.89
Transmembrane Helix	89	107	0.56
Non-Cytoplasmic	108	116	0.36
Transmembrane Helix	117	140	0.78
Cytoplasmic	141	150	0.40
Transmembrane Helix	151	170	0.50
Non-Cytoplasmic	171	178	0.42
Transmembrane Helix	179	194	0.49
Cytoplasmic	195	212	0.57
Transmembrane Helix	213	231	0.58
Non-Cytoplasmic	232	238	0.61
Transmembrane Helix	239	261	0.91
Cytoplasmic	262	332	0.82
Transmembrane Helix	333	351	0.51
Non-Cytoplasmic	352	368	0.65
Transmembrane Helix	369	393	0.87
Cytoplasmic	394	527	0.71
Transmembrane Helix	528	549	0.88
Non-Cytoplasmic	550	554	0.64
Transmembrane Helix	555	576	0.87
Cytoplasmic	577	587	0.50
Transmembrane Helix	588	609	0.69
Non-Cytoplasmic	610	613	0.48
Transmembrane Helix	614	630	0.79
Cytoplasmic	631	644	0.77
Transmembrane Helix	645	664	0.91
Non-Cytoplasmic	665	726	0.76
Transmembrane Helix	727	749	0.85
Cytoplasmic	750	990	0.76
Transmembrane Helix	991	1011	0.81
Non-Cytoplasmic	1012	1020	0.46
Transmembrane Helix	1021	1036	0.32
Cytoplasmic	1037	1071	0.51
Transmembrane Helix	1072	1102	0.72
Non-Cytoplasmic	1103	1189	0.61
Transmembrane Helix	1190	1214	0.90
Cytoplasmic	1215	1267	0.97
Transmembrane Helix	1268	1289	0.89
Non-Cytoplasmic	1290	1302	0.84
Transmembrane Helix	1303	1326	0.85
Cytoplasmic	1327	1336	0.85
Transmembrane Helix	1337	1361	0.83
Non-Cytoplasmic	1362	1399	0.87
Transmembrane Helix	1400	1421	0.90
Cytoplasmic	1422	1437	0.74
Transmembrane Helix	1438	1457	0.80
Non-Cytoplasmic	1458	1497	0.88
Transmembrane Helix	1498	1520	0.88
Cytoplasmic	1521	1702	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTSPEPKGL VPFTAESLEL IKNHIAKKCN EEHEEEDLKP SRDIEAGKKL PFAYGTLPQG  60
   61 TVSEPLEDVD PYYYVKRNTF MVLNRNRVIF RFNAVSILCT LSPLSSLRRA VIKVLVHPLL 120
  121 RLLILISVLT DSILMCMSNL PEWILAVENT CLGIYTFEIL VKVIARGIWA GSFSFLGDLW 180
  181 NWLDFSVTLF ELITRSSPLS SLPMFKTIRT LRILKIIPLN HGLQSIVVTL VQCLKKLLGA 240
  241 IALALFFLTV SSLFGMGLFM GNLKHKCVRW PQEDGNDVMY SGTGSQYHIL ERENFYYMEG 300
  301 ARYALLCGNK TDAGLCPEGY MCVKEGSNPD NGFTSFDNFG WALLAMFRLM TQDYPELLYH 360
  361 QILYASGKIY MIFFVLISFW FAFYMASLFL GILTMAYEQE KQRASEESRD MDSKCHQTVK 420
  421 EFEEEHEGAE LQCIWFYEEV LDLLGLELCI KEMETTQIEM KKRSPTSINT TLDILEDTAL 480
  481 GHKEEPETSR KECPLCWYKF TKTCFIWKCS PCWIKLNEFA DRIITHPLFD LFLVICIILN 540
  541 ICFLALEHFP MSEELMSLLA IGNLVFIGIY TIEMILKIIA MHPYGYFQIS WHIFDSILVV 600
  601 LGLTEMLLAD IEEITVFILV PLIFIKLGKY APPFKNLMRI LGRALVALKD LVLLVSIFIY 660
  661 FSAVFGMKLF GRSYKDCVCH VDQDCQRQRW HMSDFLHAYV TVFRILCGEW IETLWECMEV 720
  721 AGEAWCIPFY MMVILIGNLL ILYLFVGLVS SFASYDATTE VSKEAKNLQL AVAWIKMVIN 780
  781 CVLLKILCKE KTVSTEATDQ TCDPSVKENI SGHTLSELSN TQTFLRYKDQ SSGTEKTPVT 840
  841 ESESQSLIAS PSVSETVPIA SGESDIENLD NKETRSKSAN GSSKEKMKQS SSSECSTVDI 900
  901 AISEEEEMVY EHEKSKLHKN GYERKSSAGQ VSRESRNGKI WRNIRKTCCK IVENSWFECF 960
  961 IGLVTLLCTG TLALEDIYIH QRKTIKIFLE YGDMIFAYIF ILEMLLKWVA YGFKAYFSNN1020
 1021 WYKLDFMVVI VLCLSLKGKT REDLNPLPSI KFLRALRVLS QFERMKVVLR ALIKTTLPAV1080
 1081 SVFLVCLMIW LLFSVMGVFL FAGKFYECID PTRGERFSVF EVMNKSQCEN LVFNESMPWE1140
 1141 NAKLNFDNVG NGFLSLFQVA TFNGWISIMN SAIDSVGVYM QPSFEHSLHM YTYFIIFVVF1200
 1201 GLFLPLCMLI GVIIRNFNKQ KIKQGGSNIF ITVKQKKQYR ALKKLLYADS QKPAARPRNK1260
 1261 FQGFICDVVT HRVFNVVVVL LICFQATTIM IQNDEQSPQI ETAVFWMNSL FTMLFTLECI1320
 1321 LKLTAFRCHY FTSAWNVHDF MVVVFSITGL LLPLSIGQYF VPPSLVQLLL LSRIIHVLRP1380
 1381 GKGPKVFHDL MLPLMLSLPA LLNIGLLIFL VMFIYAIFGM YNFAYVKKEA GINDVSNFET1440
 1441 FGSSMLCLFQ VTTFSGWDGM LDAIFNSQWS DCDPDKINPG TQVRGDCGSP SVGIFYFVSY1500
 1501 ILISWLIIVN MYVVLIMEFL SIPSKRKNRT LSEDDFRRFF KVWNRFDPDR TQYIDSTKLS1560
 1561 DFAAALDPPL FMAKPNKGQL VAMDLPMAAG DRIHCLDILL AFTKRVMGKD ERVEKILSEI1620
 1621 ESGFMLANPF KITYEPITTT LKRKQEAVSA TIIQRAYKSY RLRQSDKKIQ DIPEIDDGRE1680
 1681 DPNSKGVHSG QIEEKASIQT QI