YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD63_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVEGGMKCV KFLLYVLLLA FCACAVGLIA IGVAVQVVLK QAITHETTAG SLLPVVIIAV  60
   61 GAFLFLVAFV GCCGACKENY CLMITFAIFL SLIMLVEVAV AIAGYVFRDQ VKSEFSKSFQ 120
  121 KQMQNYLTDN KTATILDKLQ KENKCCGASN YTDWERIPGM AKDRVPDSCC INITVGCGND 180
  181 FKESTIHTQG CVETIAAWLR KNVLLVAGAA LGIAFVEVLG IIFSCCLVKS IRSGYEVM

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	35	0.92
Non-Cytoplasmic	36	51	0.81
Transmembrane Helix	52	73	0.93
Cytoplasmic	74	81	0.76
Transmembrane Helix	82	105	0.90
Non-Cytoplasmic	106	204	0.95
Transmembrane Helix	205	228	0.87
Cytoplasmic	229	238	0.86