YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PE2R1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPYGLNLSL VDEATTCVTP RVPNTSVVLP TGGNGTSPAL PIFSMTLGAV SNVLALALLA  60
   61 QVAGRLRRRR STATFLLFVA SLLAIDLAGH VIPGALVLRL YTAGRAPAGG ACHFLGGCMV 120
  121 FFGLCPLLLG CGMAVERCVG VTQPLIHAAR VSVARARLAL ALLAAMALAV ALLPLVHVGH 180
  181 YELQYPGTWC FISLGPPGGW RQALLAGLFA GLGLAALLAA LVCNTLSGLA LLRARWRRRR 240
  241 SRRFRENAGP DDRRRWGSRG LRLASASSAS SITSTTAALR SSRGGGSARR VHAHDVEMVG 300
  301 QLVGIMVVSC ICWSPLLVLV VLAIGGWNSN SLQRPLFLAV RLASWNQILD PWVYILLRQA 360
  361 MLRQLLRLLP LRVSAKGGPT ELSLTKSAWE ASSLRSSRHS GFSHL

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.96
Transmembrane Helix	39	62	0.88
Cytoplasmic	63	72	0.87
Transmembrane Helix	73	94	0.91
Non-Cytoplasmic	95	110	0.83
Transmembrane Helix	111	135	0.86
Cytoplasmic	136	155	0.92
Transmembrane Helix	156	178	0.91
Non-Cytoplasmic	179	203	0.93
Transmembrane Helix	204	232	0.89
Cytoplasmic	233	262	0.91
Transmembrane Helix	263	279	0.54
Non-Cytoplasmic	280	301	0.50
Transmembrane Helix	302	327	0.88
Cytoplasmic	328	405	0.58