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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LRP3_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.66
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKRAAAGPE GAPGARAPLA VVCLVNLFLT GRLSSAVPAL AACSGKLEQH TERRGVIYSP  60
   61 AWPLNYPPGT NCSWYIQGDR GDMITISFRN FDVEESHQCS LDWLLLGPAA PPRQEAFRLC 120
  121 GSAIPPAFIS ARDHVWIFFH SDASSSGQAQ GFRLSYIRGK LGQASCQTDE FRCDNGKCLP 180
  181 GPWQCNMVDE CGDGSDEGNC SAPASEPPGS LCPGGTFPCS GARSTRCLPV ERRCDGTQDC 240
  241 GDGSDEAGCP DLACGRRLGS FYGSFASPDL FGAARGPSDL HCTWLVDTQD PRRVLLQLEL 300
  301 RLGYDDYVQV YEGLGERGDR LLQTLSYRSN HRPVSLEAAQ GRLTVAYHAR ARSAGHGFNA 360
  361 TYQVKGYCLP WEQPCGSSSE GDDGSTGEQG CFSEPQRCDG WWHCASGRDE QGCPACPPDQ 420
  421 YPCEGGSGLC YAPADRCNNQ KSCPDGADEK NCFSCQPGTF HCGTNLCIFE TWRCDGQEDC 480
  481 QDGSDEHGCL AAVPRKVITA ALIGSLVCGL LLVIALGCAF KLYSLRTQEY RAFETQMTRL 540
  541 EAEFVRREAP PSYGQLIAQG LIPPVEDFPV YSASQASVLQ NLRTAMRRQM RRHASRRGPS 600
  601 RRRLGRLWNR LFHRPRAPRG QIPLLTAART SQTVLGDGLL QAAPGPVPDP PVPNTDTGSP 660
  661 REAGDGPPSG SGHAPEVGPS VPPPPLNLRD PEYRPEDKER KACVDPLEDS PAPVDTPPEP 720
  721 CLAQDPHPQT PTASGIQDPH SAEPLGVCRS PPPTCSPILE ASDDEALLVC 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle