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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PGCB_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPLLLSLLA ALVLTQAPAA LADDLKEDSS EDRAFRVRIG AAQLRGVLGG ALAIPCHVHH  60
   61 LRPPPSRRAA PGFPRVKWTF LSGDREVEVL VARGLRVKVN EAYRFRVALP AYPASLTDVS 120
  121 LVLSELRPND SGVYRCEVQH GIDDSSDAVE VKVKGVVFLY REGSARYAFS FAGAQEACAR 180
  181 IGARIATPEQ LYAAYLGGYE QCDAGWLSDQ TVRYPIQNPR EACYGDMDGY PGVRNYGVVG 240
  241 PDDLYDVYCY AEDLNGELFL GAPPGKLTWE EARDYCLERG AQIASTGQLY AAWNGGLDRC 300
  301 SPGWLADGSV RYPIITPSQR CGGGLPGVKT LFLFPNQTGF PSKQNRFNVY CFRDSAHPSA 360
  361 FSEASSPASD GLEAIVTVTE KLEELQLPQE AVESESRGAI YSIPITEDGG GGSSTPEDPA 420
  421 EAPRTPLESE TQSVAPPTGS SEEEGEALEE EERFKDTETP KEEKEQENLW VWPTELSSPL 480
  481 PTGLETEHSL SQVSPPAQAV LQVGASPSPR PPRVHGPTVE TLQPPGEGSL TSTPDGAREV 540
  541 GGETGSPELS GVPREREEAG SSSLEDGPSL LPETWAPVGT REVETPSEEK SGRTVLTGTS 600
  601 VQAQPVLPTD SASRGGVAVA PSSGDCIPSP CHNGGTCLEE KEGFRCLCVP GYGGDLCDVG 660
  661 LHFCSPGWEP FQGACYKHFS TRRSWEEAES QCRALGAHLT SICTPEEQDF VNDRYREYQW 720
  721 IGLNDRTIEG DFLWSDGPPL LYENWNPGQP DSYFLSGENC VVMVWHDQGQ WSDVPCNYHL 780
  781 SYTCKMGLVS CGPPPQLPLA QIFGRPRLRY AVDTVLRYRC RDGLAQRNLP LIRCQENGLW 840
  841 EAPQISCVPR RPARALRSMT APEGPRGQLP RQRKALLTPP SSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle